Hardware :      

Kadir Has University holds a 136 core HP cluster on 16 nodes; 14 of them having 8 of each, 2 of them having each 12 nodes. Our department holds 3 high capacity working stations for our Master’s and PhD students (2 Dell Precision, 1 HP work station). Besides, the researches could access distantly, through their personal computers.

Software:

Discovery Studio - Accelrys Computational Modeling 3.5

Protocols used:

- Gaussian 09 Rev A.02 EMT64/Linux
- Gauss View 5 V. x86_64/Linux
- NAMD (Nano Scale Molecular Dynamics)
- VMD (Visual Molecular Dynamics)
- Gromacs V. 4
- AutoDock 4.2 ( Molecular Docking Program)
- ADT (Autodock Tools)

Photos:

You can check out some results from our lab